I have experienced a similar issue and in my case It was caused 2 MCCC issues.
- If you set the tray import for NPCs to 100% then it interferes with the suspects matching the case clues and a the case cannot be completed.
- If you use MCCC Dresser with a config file to automatically change outfits to a defined outfit list (like the Fashion Police mod) it also disrupts suspects from matching the case evidence.
I have set my tray import to 50% and I've disabled automatic dresser changes and Cases resolve normally now.
I suspect that other mods that restrict NPC wardrobe and traits at creation may also cause the same issues.